I don't think this is something that you should worry about.
If you've disabled your host OS's IPv6 networking, then Pi-hole won't have IPv6 connectivity either.
The message may be related to Pi-hole's embedded dnsmasq/pihole-FTL default behaviour (and technically, it may be correct).
By default, pihole-FTL will bind the wildcard address, so it can provide services on all interfaces as they come and go, i.e. if you'd reenable IPv6, Pi-hole would be able to serve its host's IPv6 addresses straight away.