I had the same issue where all my custom entries did not resolve. They started working as soon as I checked out the branch with the fix.
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"at some point" now
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Switching back to development-v6
gives me some errors that it cannot resolve github.com:
Please note that changing branches severely alters your Pi-hole subsystems
Features that work on the master branch, may not on a development branch
This feature is NOT supported unless a Pi-hole developer explicitly asks!
Have you read and understood this? [y/N] y
[✓] Branch development-v6 exists
[i] Switching to branch: "development-v6" from "development-v6"
[✓] Downloading and Installing FTL
[✓] Restarting pihole-FTL service...
[✓] Enabling pihole-FTL service to start on reboot...
fatal: unable to access 'https://github.com/pi-hole/pi-hole/': Could not resolve host: github.com
Looking at the code, it seems to only be the update check that is failing, probably because FTL is not completely up yet, so I just ran pihole -up
afterwards.